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Last update on 22. Oct 2017 .
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    Count different chars/column

    OCCURRENCE

    ARB_NT/SAI/Other functions/Count different chars/column

     

    DESCRIPTION

    For each column in the alignment of the marked species, count the number of different base characters occurring.

    Write result as SAI 'COUNTED_CHARS' with the following interpretation:

    '0'       empty column
'1'       only 1 base in this column (conserved column)
'2'..'9'  2..9   different bases occurred
'A'..'Z'  10..25 different bases occurred
     

    NOTES

    None

     

    EXAMPLES

    None

     

    WARNINGS

    None

     

    BUGS

    No bugs known