AUTODETECT "LOCUS *\nORIGIN*" #Global settings: KEYWIDTH 12 FILETAG GB BEGIN "LOCUS*" MATCH "LOCUS *" SRT "* *=*1" WRITE "name" MATCH "LOCUS *" SRT "* *=*1" TAG "GB" WRITE "id" MATCH "LOCUS *" SRT " = : = : = : = :* * *=*2" TAG "GB" WRITE "db_nuc" MATCH "LOCUS *" SRT " = : = : = : = :* * * * * * *=*7" TAG "GB" WRITE "date" MATCH "LOCUS *" SRT "*=" # SRT "*=" # SETVAR x # SETVAR y MATCH "DEFINITION *" TAG "GB" APPEND "definition" MATCH "ACCESSION *" SRT "\"*\"=*1:No information=" ACI "extract_words("0123456789",4.0)" WRITE "acc" MATCH "ACCESSION *" SRT "\"*\"=*1:No information=" ACI "extract_words("0123456789",4.0)" TAG "GB" WRITE "db_acc" MATCH "VERSION *" TAG "GB" WRITE "version" MATCH "KEYWORDS *" TAG "GB" WRITE "source" MATCH "SOURCE *" TAG "GB" WRITE "source" MATCH " ORGANISM *" TAG "GB" SRT "*|*=*1" WRITE "db_name" MATCH " ORGANISM *" TAG "GB" SRT "*|*=*2" WRITE "tax" MATCH " ORGANISM *" SRT "* * *=*1 *2" WRITE "full_name" MATCH "REFERENCE *" SRT "* *=*1" SETVAR x TAG "GB" APPEND "num_bib" MATCH "REFERENCE *" SRT "(=:)=:?*=[?]*" TAG "GB" APPEND "gene_pos" MATCH " AUTHORS *" SRT "*=[$x]\: *" TAG "GB" APPEND "author" MATCH " TITLE *" SRT "*=[$x]\: *" TAG "GB" APPEND "title" MATCH " JOURNAL *" SRT "*=[$x]\: *" TAG "GB" APPEND "journal" MATCH " MEDLINE *" SRT "*=[$x]\: *" TAG "GB" APPEND "medline" MATCH " PUBMED *" SRT "*=[$x]\: *" TAG "GB" APPEND "pubmed" MATCH " source*cell_line*" SRT "*/cell_line\=\"*\"*=*2" TAG "GB" WRITE "cell_line" MATCH " source*cell_type*" SRT "*/cell_type\=\"*\"*=*2" TAG "GB" WRITE "cell_type MATCH " source*cultivar*" SRT "*/cultivar\=\"*\"*=*2" TAG "GB" WRITE "cultivar" MATCH " source*db_xref*" SRT "*/db_xref\=\"*\"*=*2" TAG "GB" WRITE "db_ref" MATCH " source*isolate*" SRT "*/isolate\=\"*\"*=*2" TAG "GB" WRITE "isolate" MATCH " source*isolation_source*" SRT "*/isolation_source\=\"*\"*=*2" TAG "GB" WRITE "isol_src" MATCH " source*clone*" SRT "*/clone\=\"*\"*=*2" TAG "GB" WRITE "clone" MATCH " source*mol_type*" SRT "*/mol_type\=\"*\"*=*2" TAG "GB" WRITE "mol_type" MATCH " source*map*" SRT "*/map\=\"*\"*=*2" TAG "GB" WRITE "map" MATCH " source*organelle*" SRT "*/organelle\=\"*\"*=*2" TAG "GB" WRITE "organelle" MATCH " source*plasmid*" SRT "*/plasmid\=\"*\"*=*2" TAG "GB" WRITE "plasmid" MATCH " source*sero_type*" SRT "*/sero_type\=\"*\"*=*2" TAG "GB" WRITE "serotype" MATCH " source*sero_var*" SRT "*/sero_var\=\"*\"*=*2" TAG "GB" WRITE "serovar" MATCH " source*specimen_voucher*" SRT "*/specimen_voucher\=\"*\"*=*2" TAG "GB" WRITE "voucher" MATCH " source*specific_host*" SRT "*/specific_host\=\"*\"*=*2" TAG "GB" WRITE "host" MATCH " source*strain=*" TAG "GB" SRT "*strain\=\"*\"*=*2" WRITE "strain" MATCH " source*sub_species=*" TAG "GB" SRT "*sub_species\=\"*\"*=*2" WRITE "subspec" MATCH " source*sub_strain=*" TAG "GB" SRT "*sub_strain\=\"*\"*=*2" WRITE "substrain" MATCH " source*tissue_type=*" TAG "GB" SRT "*tissue_type\=\"*\"*=*2" WRITE "tissue" MATCH " source*note*" SRT "*/note\=\"*\"*=*2" TAG "GB" WRITE "note" MATCH " Protein*note*" SRT "*/note\=\"*\"*=*2" TAG "GB" APPEND "description" MATCH " Protein*EC_number*" SRT "*/EC_number\=\"*\"*=*2" TAG "GB" APPEND "EC_number" MATCH " Protein*product=*" SRT "*/product\=\"*\"*=*2" TAG "GB" APPEND "gene_prod" MATCH " CDS*" SRT "<=:>=:*|*=*1" SETVAR y TAG "GB" APPEND "cds_pos" MATCH " CDS*allele*" SRT "*/allele\=\"*\"*=*2:*=[$y]\: *" TAG "GB" APPEND "allele" MATCH " CDS*citation*" SRT "*/citation\=\"*\"*=*2:*=[$y]\: *" TAG "GB" APPEND "biblio" MATCH " CDS*codon_start*" SRT "*/codon_start\=*|*=*2:*=[$y]\: *" TAG "GB" APPEND "codon_start" MATCH " CDS*db_xref*" SRT "*/db_xref\=\"*\"*=*2:*=[$y]\: *" TAG "GB" APPEND "db_ref" MATCH " CDS*function*" SRT "*/function\=\"*\"*=*2:*=[$y]\: *" TAG "GB" APPEND "function" MATCH " CDS*gene*" # SRT "*/gene\=\"*\"*=*2:*=*x" # SRT "*/gene\=\"*\"*=*2:*=[$y]\: *" SRT "*/gene\=\"*\"*=*2:*=[$y]\: *" # ACI "$y" TAG "GB" APPEND "gene" MATCH " CDS*map*" SRT "*/map\=\"*\"*=*2:*=[$y]\: *" TAG "GB" APPEND "map" MATCH " CDS*note*" SRT "*/note\=\"*\"*=*2:*=[$y]\: *" TAG "GB" APPEND "note" MATCH " CDS*EC_number*" SRT "*/EC_number\=\"*\"*=*2:*=[$y]\: *" TAG "GB" APPEND "EC_number" MATCH " CDS*product=*" SRT "*/product\=\"*\"*=*2:*=[$y]\: *" TAG "GB" APPEND "product" MATCH " CDS*operon=*" SRT "*/operon\=\"*\"*=*2:*=[$y]\: *" TAG "GB" APPEND "operon" MATCH " CDS*protein_id=*" SRT "*/protein_id\=\"*\"*=*2:*=[$y]\: *" TAG "GB" APPEND "prot_id" MATCH " CDS*translation=*" SRT "*/translation\=\"*\"*=*2:*=[$y]\: *" TAG "GB" APPEND "translation" MATCH " CDS*transl_table=*" SRT "*/transl_table\=*|*=*2:*=[$y]\: *" TAG "GB" APPEND "transl_table" MATCH " rRNA*" SRT "<=:>=:*|*=*1" SETVAR z TAG "GB" APPEND "rrna_pos" MATCH " rRNA*db_xref*" SRT "*/db_xref\=\"*\"*=*2:[$z]\: *" TAG "GB" APPEND "db_ref" MATCH " rRNA*evidence*" SRT "*/evidence\=\"*\"*=*2:[$z]\: *" TAG "GB" APPEND "evidence" MATCH " rRNA*allele*" SRT "*/allele\=\"*\"*=*2:[$z]\: *" TAG "GB" APPEND "allele" MATCH " rRNA*function*" SRT "*/function\=\"*\"*=*2:[$z]\: *" TAG "GB" APPEND "function" MATCH " rRNA*citation*" SRT "*/citation\=\"*\"*=*2:[$z]\: *" TAG "GB" APPEND "citation" MATCH " rRNA*gene*" SRT "*/gene\=\"*\"*=*2:[$z]\: *" TAG "GB" APPEND "gene" MATCH " rRNA*map*" SRT "*/map\=\"*\"*=*2:[$z]\: *" TAG "GB" APPEND "map" MATCH " rRNA*note*" SRT "*/note\=\"*\"*=*2:[$z]\: *" TAG "GB" APPEND "note" MATCH " rRNA*operon*" SRT "*/operon\=\"*\"*=*2:[$z]\: *" TAG "GB" APPEND "operon" MATCH " rRNA*product*" SRT "*/product\=\"*\"*=*2:[$z]\: *" TAG "GB" APPEND "product" SEQUENCEAFTER "ORIGIN*" SEQUENCESRT " =:~=.:*Check*..=" SEQUENCEACI "remove("0123456789 /")" SEQUENCECOLUMN 0 SEQUENCEEND "//" CREATE_ACC_FROM_SEQUENCE END "//"