Here you can change various options:
Display bases
Toggle display of bases
Distance between strands
Sets the distance between opposite helix strands (default=1)
Display bonds + Bond thickness
Select whether/how to display bonds. You can choose to display bonds for non-helical parts in the middle of a helix region by selecting '+Non-helix'. Click the 'DEFINE' button to specify bond-types and their layout (see
´SECEDIT bond definitions´). 'Bond thickness' defines the linewidth used to draw bonds.
Annotate cursor
Defines whether/how the current cursor position is annotated. If annotated, a small box containing a position number gets displayed.
Annotate helices
If checked, each helix is annotated with its helix-number (as defined in SAI "HELIX_NR"; see
´Helix´).
Annotate ecoli positions
If checked, every 100th ecoli position is annotated.
Show all positions ...
All positions where the sequence of the currently selected species has bases will always be displayed. You can choose to additionally display
-
Binding helix positions
-
Ecoli base positions
Display Structure Skeleton + Skeleton thickness
Draw a skeleton of the secondary structure with variable line thickness.